Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AC140479.7-201ENST00000636301 2332 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 RN7SKP175-201ENST00000408472 289 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 KRT8P13-201ENST00000463294 1010 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AC079316.1-201ENST00000548397 411 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AC243960.2-201ENST00000600996 747 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AC073413.1-201ENST00000603927 732 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AP000593.2-201ENST00000542775 1433 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 AHCYP2-201ENST00000430630 1300 ntBASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CUEDC1Q9NWM3 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AC007292.2-201ENST00000593524 1812 ntBASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 COX5BP1-201ENST00000507622 393 ntBASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AC131206.1-201ENST00000538078 1211 ntBASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 MIR4683-201ENST00000579659 81 ntBASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CUEDC1Q9NWM3 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 GRK6P1-201ENST00000400595 1711 ntBASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CUEDC1Q9NWM3 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms