Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 AC103702.1-201ENST00000548801 2630 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 SAP18P2-201ENST00000434334 459 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 ASS1P2-201ENST00000439895 1223 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 AL132994.1-201ENST00000554098 400 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
COL12A1Q99715 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
COL12A1Q99715 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
COL12A1Q99715 OR52M2P-201ENST00000414298 959 ntBASIC12.55□□□□□ -0.4
COL12A1Q99715 CICP12-201ENST00000455801 843 ntBASIC12.55□□□□□ -0.4
COL12A1Q99715 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.55□□□□□ -0.4
COL12A1Q99715 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC12.55□□□□□ -0.4
COL12A1Q99715 CES1P2-201ENST00000566467 1242 ntBASIC12.55□□□□□ -0.4
COL12A1Q99715 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
COL12A1Q99715 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC12.55□□□□□ -0.4
COL12A1Q99715 SIRPB3P-201ENST00000340424 1216 ntBASIC12.55□□□□□ -0.4
COL12A1Q99715 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AP000244.1-201ENST00000424582 201 ntBASIC12.55□□□□□ -0.4
COL12A1Q99715 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AC093106.1-201ENST00000437271 352 ntBASIC12.55□□□□□ -0.4
COL12A1Q99715 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC12.55□□□□□ -0.4
COL12A1Q99715 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.55□□□□□ -0.4
COL12A1Q99715 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.55□□□□□ -0.4
COL12A1Q99715 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
COL12A1Q99715 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL12A1Q99715 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 AC010531.8-201ENST00000623341 685 ntBASIC12.54□□□□□ -0.4
COL12A1Q99715 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 ESR1-214ENST00000638569 132 ntTSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms