Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 MIR566-201ENST00000385187 94 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC005740.1-201ENST00000515639 522 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 FOXN3-AS2-201ENST00000554071 1262 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC010632.2-201ENST00000588369 1224 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC010976.2-201ENST00000609697 852 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC018695.6-201ENST00000614011 534 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AL162727.3-201ENST00000635661 2787 ntBASIC18.2■□□□□ 0.5
RC3H1Q5TC82 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.2■□□□□ 0.5
RC3H1Q5TC82 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 KRT18P46-201ENST00000435568 1279 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 GRPEL2P1-201ENST00000453145 339 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 AC106047.2-201ENST00000511723 743 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 SORD2P-201ENST00000558556 1069 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 GOLGA2P7-209ENST00000560408 745 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 EIF5AP2-201ENST00000585668 1047 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ZNF436-AS1-201ENST00000335648 2547 ntBASIC18.19■□□□□ 0.5
RC3H1Q5TC82 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
RC3H1Q5TC82 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 OR51A9P-201ENST00000422578 911 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 PFN2-212ENST00000490975 858 ntTSL 4 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AC090136.2-201ENST00000517809 420 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 TREHP1-201ENST00000531328 465 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 KLF17P1-201ENST00000547105 1126 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AC013553.1-201ENST00000560906 267 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AP005264.5-201ENST00000590066 467 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 RPS5-204ENST00000598098 536 ntTSL 2 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 HMGB1P24-201ENST00000611897 328 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 AC091769.1-201ENST00000619576 568 ntBASIC18.18■□□□□ 0.5
RC3H1Q5TC82 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC18.18■□□□□ 0.5
RC3H1Q5TC82 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms