Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC215219.1-201ENST00000400706 1817 ntBASIC15.66■□□□□ 0.1
SOX4Q06945 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
SOX4Q06945 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX4Q06945 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX4Q06945 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX4Q06945 AC007274.2-201ENST00000421675 662 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 AC006335.1-201ENST00000445200 547 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX4Q06945 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX4Q06945 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.65■□□□□ 0.1
SOX4Q06945 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 AC242376.1-201ENST00000559033 726 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 AC079328.1-201ENST00000560358 952 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 AC016629.1-201ENST00000596579 586 ntBASIC15.65■□□□□ 0.1
SOX4Q06945 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX4Q06945 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SOX4Q06945 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX4Q06945 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
SOX4Q06945 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.64■□□□□ 0.1
SOX4Q06945 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SOX4Q06945 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 RTN3P1-201ENST00000536295 711 ntBASIC15.64■□□□□ 0.09
SOX4Q06945 MIR3907-201ENST00000579424 151 ntBASIC15.64■□□□□ 0.09
SOX4Q06945 MIR4754-201ENST00000582477 89 ntBASIC15.64■□□□□ 0.09
SOX4Q06945 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX4Q06945 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX4Q06945 AHCYP4-201ENST00000419201 1315 ntBASIC15.64■□□□□ 0.09
SOX4Q06945 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX4Q06945 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX4Q06945 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX4Q06945 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX4Q06945 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX4Q06945 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX4Q06945 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX4Q06945 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX4Q06945 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX4Q06945 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX4Q06945 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms