Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GOLGA2P8-201ENST00000505201 779 ntBASIC10.22□□□□□ -0.77
PRKDCP78527 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC10.22□□□□□ -0.77
PRKDCP78527 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 PMM2-216ENST00000569958 698 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC10.22□□□□□ -0.77
PRKDCP78527 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC10.22□□□□□ -0.77
PRKDCP78527 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 MIR632-201ENST00000385193 94 ntBASIC10.22□□□□□ -0.77
PRKDCP78527 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 MORN2-205ENST00000410014 750 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC10.22□□□□□ -0.77
PRKDCP78527 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 AC002350.2-201ENST00000623894 1828 ntBASIC10.22□□□□□ -0.77
PRKDCP78527 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
PRKDCP78527 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 AL009176.1-201ENST00000607876 650 ntBASIC10.22□□□□□ -0.77
PRKDCP78527 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 MED25-209ENST00000612791 881 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
PRKDCP78527 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC10.21□□□□□ -0.77
PRKDCP78527 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC10.21□□□□□ -0.77
PRKDCP78527 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC10.21□□□□□ -0.77
PRKDCP78527 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC10.21□□□□□ -0.77
PRKDCP78527 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC10.21□□□□□ -0.77
PRKDCP78527 AC063977.2-201ENST00000601996 421 ntBASIC10.21□□□□□ -0.77
PRKDCP78527 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC10.21□□□□□ -0.77
PRKDCP78527 DUX4L33-201ENST00000635217 958 ntBASIC10.21□□□□□ -0.77
PRKDCP78527 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC10.21□□□□□ -0.77
PRKDCP78527 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
PRKDCP78527 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC10.21□□□□□ -0.77
PRKDCP78527 AC022532.1-201ENST00000624563 1728 ntBASIC10.21□□□□□ -0.78
PRKDCP78527 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
PRKDCP78527 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC10.21□□□□□ -0.78
PRKDCP78527 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC10.21□□□□□ -0.78
PRKDCP78527 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC10.21□□□□□ -0.78
PRKDCP78527 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
PRKDCP78527 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
PRKDCP78527 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC10.21□□□□□ -0.78
PRKDCP78527 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
PRKDCP78527 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC10.21□□□□□ -0.78
PRKDCP78527 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
PRKDCP78527 POLR3DP1-201ENST00000398689 1176 ntBASIC10.21□□□□□ -0.78
PRKDCP78527 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC10.21□□□□□ -0.78
PRKDCP78527 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
PRKDCP78527 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC10.21□□□□□ -0.78
PRKDCP78527 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC10.21□□□□□ -0.78
PRKDCP78527 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC10.21□□□□□ -0.78
PRKDCP78527 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC10.21□□□□□ -0.78
PRKDCP78527 AL031768.1-201ENST00000606542 701 ntBASIC10.21□□□□□ -0.78
PRKDCP78527 COG6-212ENST00000630730 186 ntTSL 5 BASIC10.21□□□□□ -0.78
PRKDCP78527 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC10.21□□□□□ -0.78
PRKDCP78527 AC092135.3-201ENST00000624151 1846 ntBASIC10.21□□□□□ -0.78
PRKDCP78527 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
PRKDCP78527 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC10.21□□□□□ -0.78
PRKDCP78527 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
PRKDCP78527 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms