Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
SUMO3P55854 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.35□□□□□ -0.27
SUMO3P55854 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.35□□□□□ -0.27
SUMO3P55854 MTX1P1-201ENST00000440904 838 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.35□□□□□ -0.27
SUMO3P55854 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.35□□□□□ -0.27
SUMO3P55854 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.35□□□□□ -0.27
SUMO3P55854 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.35□□□□□ -0.27
SUMO3P55854 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.35□□□□□ -0.27
SUMO3P55854 MIR6720-201ENST00000611664 98 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.35□□□□□ -0.27
SUMO3P55854 AC007191.1-201ENST00000623179 2995 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.35□□□□□ -0.27
SUMO3P55854 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 AC006504.5-208ENST00000588784 2401 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 AC007686.3-201ENST00000619017 3487 ntBASIC13.35□□□□□ -0.27
SUMO3P55854 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SUMO3P55854 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SUMO3P55854 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.35□□□□□ -0.27
SUMO3P55854 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 E2F3P2-201ENST00000447755 1422 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.34□□□□□ -0.27
SUMO3P55854 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC012441.2-201ENST00000444843 739 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 HSPB1P2-201ENST00000448722 546 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 BNIP3P42-201ENST00000454982 569 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC100827.2-201ENST00000563214 1194 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 AC005586.2-201ENST00000563946 837 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.34□□□□□ -0.27
SUMO3P55854 RN7SL560P-201ENST00000577943 264 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 BNIP3P29-201ENST00000598302 571 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC009884.2-201ENST00000603110 324 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC011447.5-201ENST00000616168 564 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 AC009542.2-202ENST00000619004 1067 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 RN7SL832P-201ENST00000607781 1756 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
SUMO3P55854 TUBB1P2-201ENST00000422712 1306 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 TUBB1P1-201ENST00000503144 1300 ntBASIC13.34□□□□□ -0.27
SUMO3P55854 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SUMO3P55854 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SUMO3P55854 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms