Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LIM2P55344 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LIM2P55344 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.03□□□□□ -0.16
LIM2P55344 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.03□□□□□ -0.16
LIM2P55344 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.03□□□□□ -0.16
LIM2P55344 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.03□□□□□ -0.16
LIM2P55344 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.03□□□□□ -0.16
LIM2P55344 AP006547.1-201ENST00000563435 692 ntBASIC14.03□□□□□ -0.16
LIM2P55344 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
LIM2P55344 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.03□□□□□ -0.16
LIM2P55344 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
LIM2P55344 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
LIM2P55344 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LIM2P55344 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
LIM2P55344 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.02□□□□□ -0.16
LIM2P55344 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
LIM2P55344 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.02□□□□□ -0.16
LIM2P55344 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LIM2P55344 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.02□□□□□ -0.17
LIM2P55344 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
LIM2P55344 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.02□□□□□ -0.17
LIM2P55344 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
LIM2P55344 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.02□□□□□ -0.17
LIM2P55344 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LIM2P55344 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.02□□□□□ -0.17
LIM2P55344 YBX1P6-201ENST00000442962 1002 ntBASIC14.02□□□□□ -0.17
LIM2P55344 CHMP1AP1-201ENST00000445563 662 ntBASIC14.02□□□□□ -0.17
LIM2P55344 AL355994.2-201ENST00000447882 704 ntBASIC14.02□□□□□ -0.17
LIM2P55344 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.02□□□□□ -0.17
LIM2P55344 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.02□□□□□ -0.17
LIM2P55344 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms