Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HOXA1P49639 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXA1P49639 SPDYE17-201ENST00000412399 783 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 AC004832.2-201ENST00000426397 482 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 HIST3H2BA-201ENST00000436555 524 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 FDX1P1-201ENST00000449115 551 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 KRT18P58-201ENST00000527480 1120 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 AC015910.1-201ENST00000579400 975 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 AC022145.2-201ENST00000598203 171 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.38□□□□□ -0.43
HOXA1P49639 RN7SL828P-201ENST00000607615 303 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC12.38□□□□□ -0.43
HOXA1P49639 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HOXA1P49639 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 AC012508.2-201ENST00000567613 1472 ntBASIC12.38□□□□□ -0.43
HOXA1P49639 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
HOXA1P49639 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC12.38□□□□□ -0.43
HOXA1P49639 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXA1P49639 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 ELL2P1-201ENST00000413990 1906 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXA1P49639 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXA1P49639 PMP22-202ENST00000395936 816 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXA1P49639 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 RPP21-221ENST00000428040 594 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 RBPMS2P1-201ENST00000437762 623 ntBASIC12.37□□□□□ -0.43
HOXA1P49639 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXA1P49639 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms