Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CR1P49238 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CR1P49238 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CR1P49238 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CR1P49238 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
CX3CR1P49238 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 MIR661-201ENST00000384842 89 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CX3CR1P49238 AC236430.1-201ENST00000402231 743 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.06□□□□□ -0.32
CX3CR1P49238 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 TLE1P1-201ENST00000422965 589 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 BCRP1-201ENST00000444246 691 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.06□□□□□ -0.32
CX3CR1P49238 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 WASH4P-201ENST00000564273 1246 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.06□□□□□ -0.32
CX3CR1P49238 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CLUHP6-201ENST00000580789 941 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.06□□□□□ -0.32
CX3CR1P49238 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.06□□□□□ -0.32
CX3CR1P49238 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.06□□□□□ -0.32
CX3CR1P49238 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CR1P49238 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.06□□□□□ -0.32
CX3CR1P49238 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CR1P49238 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CX3CR1P49238 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CX3CR1P49238 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 AC152010.1-201ENST00000415779 2006 ntBASIC13.05□□□□□ -0.32
CX3CR1P49238 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.05□□□□□ -0.32
CX3CR1P49238 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CX3CR1P49238 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CX3CR1P49238 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.05□□□□□ -0.32
CX3CR1P49238 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CX3CR1P49238 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 ACKR1-201ENST00000368121 1240 ntBASIC13.05□□□□□ -0.32
CX3CR1P49238 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
CX3CR1P49238 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.05□□□□□ -0.32
CX3CR1P49238 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.05□□□□□ -0.32
CX3CR1P49238 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CX3CR1P49238 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.05□□□□□ -0.32
CX3CR1P49238 AC002472.2-201ENST00000442739 958 ntBASIC13.05□□□□□ -0.32
CX3CR1P49238 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.05□□□□□ -0.32
CX3CR1P49238 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms