Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL18A1P39060 OR7E115P-201ENST00000382617 1024 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 FAM21EP-201ENST00000417804 985 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 ZNF877P-201ENST00000437614 612 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL18A1P39060 AC092896.1-201ENST00000465850 380 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 AC092903.1-201ENST00000466506 262 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 RN7SL288P-201ENST00000490496 291 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC18.8■□□□□ 0.6
COL18A1P39060 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC18.8■□□□□ 0.6
COL18A1P39060 BATF-202ENST00000555504 361 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC18.8■□□□□ 0.6
COL18A1P39060 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC18.8■□□□□ 0.6
COL18A1P39060 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL18A1P39060 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL18A1P39060 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC18.8■□□□□ 0.6
COL18A1P39060 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 AC004554.1-201ENST00000422830 1468 ntBASIC18.8■□□□□ 0.6
COL18A1P39060 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL18A1P39060 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 AF274858.1-201ENST00000406288 372 ntBASIC18.79■□□□□ 0.6
COL18A1P39060 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL18A1P39060 AL080243.1-201ENST00000423293 1060 ntBASIC18.79■□□□□ 0.6
COL18A1P39060 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC18.79■□□□□ 0.6
COL18A1P39060 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC18.79■□□□□ 0.6
COL18A1P39060 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC18.79■□□□□ 0.6
COL18A1P39060 KNOP1P1-201ENST00000542108 989 ntBASIC18.79■□□□□ 0.6
COL18A1P39060 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC18.79■□□□□ 0.6
COL18A1P39060 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC18.79■□□□□ 0.6
COL18A1P39060 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.79■□□□□ 0.6
COL18A1P39060 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL18A1P39060 AC011498.7-201ENST00000624986 2027 ntBASIC18.79■□□□□ 0.6
COL18A1P39060 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.79■□□□□ 0.6
COL18A1P39060 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC18.79■□□□□ 0.6
COL18A1P39060 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL18A1P39060 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC18.78■□□□□ 0.6
COL18A1P39060 AC093300.1-201ENST00000510368 1201 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 SEPHS2P1-201ENST00000511618 1162 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 AL359219.1-201ENST00000556311 934 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 AL049840.2-201ENST00000602722 535 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 AC148477.9-201ENST00000623974 539 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL18A1P39060 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL18A1P39060 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.78■□□□□ 0.6
COL18A1P39060 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL18A1P39060 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC18.78■□□□□ 0.6
COL18A1P39060 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC18.78■□□□□ 0.6
COL18A1P39060 AL512310.5-201ENST00000551999 515 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC18.78■□□□□ 0.6
COL18A1P39060 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC18.78■□□□□ 0.6
COL18A1P39060 CASP16P-204ENST00000635032 809 ntBASIC18.78■□□□□ 0.6
COL18A1P39060 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.78■□□□□ 0.6
COL18A1P39060 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL18A1P39060 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
COL18A1P39060 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
COL18A1P39060 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms