Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
RFC4P35249 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.3■□□□□ 0.52
RFC4P35249 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.3■□□□□ 0.52
RFC4P35249 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.3■□□□□ 0.52
RFC4P35249 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.3■□□□□ 0.52
RFC4P35249 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC18.3■□□□□ 0.52
RFC4P35249 AC226150.1-201ENST00000544259 466 ntBASIC18.3■□□□□ 0.52
RFC4P35249 AL118516.1-201ENST00000564152 670 ntBASIC18.3■□□□□ 0.52
RFC4P35249 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC18.3■□□□□ 0.52
RFC4P35249 AP003392.6-201ENST00000607709 325 ntBASIC18.3■□□□□ 0.52
RFC4P35249 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RFC4P35249 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.3■□□□□ 0.52
RFC4P35249 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFC4P35249 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.3■□□□□ 0.52
RFC4P35249 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RFC4P35249 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 CICP23-201ENST00000605013 2741 ntBASIC18.29■□□□□ 0.52
RFC4P35249 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 CTBP2P8-201ENST00000422584 1330 ntBASIC18.29■□□□□ 0.52
RFC4P35249 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 PYY2-201ENST00000315776 282 ntBASIC18.29■□□□□ 0.52
RFC4P35249 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 SAT1-201ENST00000379251 801 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 SAT1-202ENST00000379253 909 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 SAT1-203ENST00000379254 868 ntTSL 3 BASIC18.29■□□□□ 0.52
RFC4P35249 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RFC4P35249 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RFC4P35249 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 RGS5-216ENST00000449680 788 ntTSL 3 BASIC18.29■□□□□ 0.52
RFC4P35249 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.29■□□□□ 0.52
RFC4P35249 PGAM1P12-201ENST00000505622 748 ntBASIC18.29■□□□□ 0.52
RFC4P35249 FAM86KP-201ENST00000509817 987 ntBASIC18.29■□□□□ 0.52
RFC4P35249 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC18.29■□□□□ 0.52
RFC4P35249 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC18.29■□□□□ 0.52
RFC4P35249 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RFC4P35249 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.29■□□□□ 0.52
RFC4P35249 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RFC4P35249 PCDHA1-201ENST00000378133 2726 ntBASIC18.29■□□□□ 0.52
RFC4P35249 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.28■□□□□ 0.52
RFC4P35249 BRD7P5-201ENST00000299197 1822 ntBASIC18.28■□□□□ 0.52
RFC4P35249 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC18.28■□□□□ 0.52
RFC4P35249 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC18.28■□□□□ 0.52
RFC4P35249 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 AC011270.2-201ENST00000624293 2550 ntBASIC18.28■□□□□ 0.52
RFC4P35249 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC18.28■□□□□ 0.52
RFC4P35249 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RFC4P35249 CELP-201ENST00000411440 1249 ntTSL 5 BASIC18.28■□□□□ 0.52
RFC4P35249 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.28■□□□□ 0.52
RFC4P35249 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms