Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HOXC9P31274 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 LINC01815-202ENST00000641468 1409 ntBASIC19.25■□□□□ 0.67
HOXC9P31274 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HOXC9P31274 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.25■□□□□ 0.67
HOXC9P31274 AL161932.2-201ENST00000435436 679 ntBASIC19.25■□□□□ 0.67
HOXC9P31274 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC19.25■□□□□ 0.67
HOXC9P31274 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC19.25■□□□□ 0.67
HOXC9P31274 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC19.25■□□□□ 0.67
HOXC9P31274 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 AC138701.2-201ENST00000553634 226 ntBASIC19.25■□□□□ 0.67
HOXC9P31274 AC140658.4-201ENST00000561990 352 ntBASIC19.25■□□□□ 0.67
HOXC9P31274 AC007952.4-201ENST00000573866 637 ntBASIC19.25■□□□□ 0.67
HOXC9P31274 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 MYADML-201ENST00000474610 2147 ntBASIC19.25■□□□□ 0.67
HOXC9P31274 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC9P31274 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC9P31274 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC9P31274 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
HOXC9P31274 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC9P31274 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 AL357563.1-201ENST00000404728 395 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC9P31274 AC097065.1-201ENST00000425737 517 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 KRT18P66-201ENST00000452970 1269 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 RNA5SP417-201ENST00000516459 108 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC19.24■□□□□ 0.67
HOXC9P31274 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC19.24■□□□□ 0.67
HOXC9P31274 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC19.24■□□□□ 0.67
HOXC9P31274 RN7SL470P-201ENST00000583069 259 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 MIR2392-201ENST00000584881 84 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 AC127024.7-201ENST00000625101 200 ntBASIC19.24■□□□□ 0.67
HOXC9P31274 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC9P31274 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HOXC9P31274 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HOXC9P31274 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
HOXC9P31274 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC19.24■□□□□ 0.67
HOXC9P31274 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC9P31274 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 AGGF1P1-201ENST00000509500 2073 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms