Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN4P29074 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PTPN4P29074 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.94□□□□□ -0.02
PTPN4P29074 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN4P29074 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PTPN4P29074 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.94□□□□□ -0.02
PTPN4P29074 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN4P29074 AC036164.1-201ENST00000570544 333 ntBASIC14.94□□□□□ -0.02
PTPN4P29074 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN4P29074 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PTPN4P29074 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
PTPN4P29074 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN4P29074 AC016397.2-201ENST00000624848 1985 ntBASIC14.94□□□□□ -0.02
PTPN4P29074 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 AL122018.1-201ENST00000446607 2310 ntBASIC14.94□□□□□ -0.02
PTPN4P29074 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.94□□□□□ -0.02
PTPN4P29074 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.94□□□□□ -0.02
PTPN4P29074 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 KRT8P24-201ENST00000560290 1559 ntBASIC14.94□□□□□ -0.02
PTPN4P29074 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 AC015909.5-201ENST00000624336 2266 ntBASIC14.94□□□□□ -0.02
PTPN4P29074 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN4P29074 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 NUTM2HP-201ENST00000442076 2498 ntBASIC14.93□□□□□ -0.02
PTPN4P29074 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PTPN4P29074 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 MIR658-201ENST00000385210 100 ntBASIC14.93□□□□□ -0.02
PTPN4P29074 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.93□□□□□ -0.02
PTPN4P29074 RPL13P2-201ENST00000440687 659 ntBASIC14.93□□□□□ -0.02
PTPN4P29074 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.93□□□□□ -0.02
PTPN4P29074 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN4P29074 AC015936.2-201ENST00000593177 259 ntBASIC14.93□□□□□ -0.02
PTPN4P29074 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PTPN4P29074 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
PTPN4P29074 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.93□□□□□ -0.02
PTPN4P29074 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.93□□□□□ -0.02
PTPN4P29074 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN4P29074 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
PTPN4P29074 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN4P29074 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 RPS2P32-201ENST00000439199 892 ntBASIC14.92□□□□□ -0.02
PTPN4P29074 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms