Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SPTA1P02549 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 AC008741.2-201ENST00000612792 3115 ntBASIC13.35□□□□□ -0.27
SPTA1P02549 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SPTA1P02549 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC13.34□□□□□ -0.27
SPTA1P02549 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 IGKV1OR-2-201ENST00000457995 350 ntBASIC13.34□□□□□ -0.27
SPTA1P02549 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.34□□□□□ -0.27
SPTA1P02549 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 AC114947.1-202ENST00000514136 344 ntBASIC13.34□□□□□ -0.27
SPTA1P02549 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC13.34□□□□□ -0.27
SPTA1P02549 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.34□□□□□ -0.27
SPTA1P02549 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SPTA1P02549 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
SPTA1P02549 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
SPTA1P02549 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
SPTA1P02549 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SPTA1P02549 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
SPTA1P02549 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SPTA1P02549 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC13.33□□□□□ -0.27
SPTA1P02549 RPL5P21-201ENST00000404620 815 ntBASIC13.33□□□□□ -0.27
SPTA1P02549 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.33□□□□□ -0.27
SPTA1P02549 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC13.33□□□□□ -0.27
SPTA1P02549 RN7SL530P-201ENST00000485097 298 ntBASIC13.33□□□□□ -0.27
SPTA1P02549 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC13.33□□□□□ -0.27
SPTA1P02549 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
SPTA1P02549 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SPTA1P02549 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.33□□□□□ -0.28
SPTA1P02549 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.33□□□□□ -0.28
SPTA1P02549 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
SPTA1P02549 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
SPTA1P02549 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
SPTA1P02549 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.33□□□□□ -0.28
SPTA1P02549 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 CFL1P6-201ENST00000400899 494 ntBASIC13.33□□□□□ -0.28
SPTA1P02549 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC13.33□□□□□ -0.28
SPTA1P02549 CTBP2P6-201ENST00000526402 1229 ntBASIC13.33□□□□□ -0.28
SPTA1P02549 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC13.33□□□□□ -0.28
SPTA1P02549 AC012073.1-201ENST00000606114 1108 ntBASIC13.33□□□□□ -0.28
SPTA1P02549 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.33□□□□□ -0.28
SPTA1P02549 MIR6746-201ENST00000620971 63 ntBASIC13.33□□□□□ -0.28
SPTA1P02549 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC13.33□□□□□ -0.28
SPTA1P02549 AC092850.2-201ENST00000623821 2697 ntBASIC13.33□□□□□ -0.28
SPTA1P02549 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.33□□□□□ -0.28
SPTA1P02549 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.33□□□□□ -0.28
SPTA1P02549 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.33□□□□□ -0.28
SPTA1P02549 AC008894.3-201ENST00000624324 3103 ntBASIC13.33□□□□□ -0.28
SPTA1P02549 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SPTA1P02549 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.32□□□□□ -0.28
SPTA1P02549 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SPTA1P02549 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms