Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 R3HDM2P2-201ENST00000401880 2116 ntBASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 KRT8P28-201ENST00000433288 1390 ntBASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 CROCCP1-201ENST00000426910 5675 ntBASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.03
SHROOM4Q9ULL8 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 AC006504.5-208ENST00000588784 2401 ntBASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 AC144831.1-201ENST00000573312 2656 ntBASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 AL590440.2-201ENST00000641973 1595 ntBASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 RN7SL470P-201ENST00000583069 259 ntBASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC27.7■■■□□ 2.02
SHROOM4Q9ULL8 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 STK16-203ENST00000409516 895 ntTSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 BANF1P3-201ENST00000412556 261 ntBASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 AC004837.1-201ENST00000446267 564 ntBASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 AL135901.1-201ENST00000451812 333 ntBASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 NEU3-207ENST00000534628 746 ntTSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 AL136172.1-201ENST00000598590 1394 ntBASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC27.69■■■□□ 2.02
SHROOM4Q9ULL8 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AC018629.1-201ENST00000623381 1736 ntBASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AC092384.3-202ENST00000564646 2873 ntBASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AC015909.3-201ENST00000572855 1794 ntBASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 STK24-203ENST00000397517 4578 ntTSL 2 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC27.68■■■□□ 2.02
SHROOM4Q9ULL8 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms