Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 KRT8P4-201ENST00000509735 1454 ntBASIC15.8■□□□□ 0.12
SIX2Q9NPC8 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC064801.2-201ENST00000625052 1303 ntBASIC15.8■□□□□ 0.12
SIX2Q9NPC8 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC010141.1-201ENST00000411585 623 ntBASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.8■□□□□ 0.12
SIX2Q9NPC8 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC009093.10-201ENST00000641956 1442 ntBASIC15.79■□□□□ 0.12
SIX2Q9NPC8 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AL035633.1-201ENST00000406139 838 ntBASIC15.79■□□□□ 0.12
SIX2Q9NPC8 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AL161932.2-201ENST00000435436 679 ntBASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 TMEM198B-204ENST00000484016 896 ntBASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AP000812.2-201ENST00000538934 718 ntBASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 AC010327.5-201ENST00000586923 3061 ntBASIC15.79■□□□□ 0.12
SIX2Q9NPC8 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX2Q9NPC8 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX2Q9NPC8 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.78■□□□□ 0.12
SIX2Q9NPC8 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX2Q9NPC8 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX2Q9NPC8 MBLAC2-202ENST00000514906 1936 ntBASIC15.78■□□□□ 0.12
SIX2Q9NPC8 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX2Q9NPC8 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms