Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL023775.1-201ENST00000454907 1746 ntBASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC126335.2-201ENST00000623362 4637 ntBASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TRIM39Q9HCM9 AC009093.2-202ENST00000620513 2079 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CICP23-201ENST00000605013 2741 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC015818.8-201ENST00000587907 1519 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC079178.1-201ENST00000420915 656 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 Z93015.1-201ENST00000451718 390 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ALG3P1-201ENST00000508806 1114 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC131206.1-201ENST00000538078 1211 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 MIR4683-201ENST00000579659 81 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 BX088702.1-201ENST00000610784 235 ntBASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TRIM39Q9HCM9 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 REXO1L6P-201ENST00000603433 1515 ntBASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM39Q9HCM9 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms