Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
MMP28Q9H239 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.17□□□□□ -0.3
MMP28Q9H239 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.17□□□□□ -0.3
MMP28Q9H239 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.17□□□□□ -0.3
MMP28Q9H239 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.17□□□□□ -0.3
MMP28Q9H239 AL353705.2-201ENST00000428243 662 ntBASIC13.17□□□□□ -0.3
MMP28Q9H239 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.17□□□□□ -0.3
MMP28Q9H239 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.17□□□□□ -0.3
MMP28Q9H239 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.17□□□□□ -0.3
MMP28Q9H239 AC025678.2-201ENST00000562061 970 ntBASIC13.17□□□□□ -0.3
MMP28Q9H239 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 AL450472.2-201ENST00000603663 1156 ntBASIC13.17□□□□□ -0.3
MMP28Q9H239 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
MMP28Q9H239 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.17□□□□□ -0.3
MMP28Q9H239 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 AC012617.1-204ENST00000586340 2305 ntBASIC13.17□□□□□ -0.3
MMP28Q9H239 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 GHSR-202ENST00000427970 912 ntBASIC13.16□□□□□ -0.3
MMP28Q9H239 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.16□□□□□ -0.3
MMP28Q9H239 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.16□□□□□ -0.3
MMP28Q9H239 AC022447.6-201ENST00000515522 438 ntBASIC13.16□□□□□ -0.3
MMP28Q9H239 AC109322.1-201ENST00000524499 1264 ntBASIC13.16□□□□□ -0.3
MMP28Q9H239 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.16□□□□□ -0.3
MMP28Q9H239 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
MMP28Q9H239 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
MMP28Q9H239 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.16□□□□□ -0.3
MMP28Q9H239 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
MMP28Q9H239 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.15□□□□□ -0.3
MMP28Q9H239 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
MMP28Q9H239 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
MMP28Q9H239 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
MMP28Q9H239 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms