Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHANK3Q9BYB0 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 AC138761.6-201ENST00000583997 1423 ntBASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 EEF1GP8-201ENST00000506566 1154 ntBASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 MBP-238ENST00000580402 915 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 AL160191.2-201ENST00000603975 601 ntBASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 GDNF-207ENST00000515058 764 ntTSL 5 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 RN7SKP155-201ENST00000516031 288 ntBASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 MIR5001-201ENST00000580185 100 ntBASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHANK3Q9BYB0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SHANK3Q9BYB0 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.46■□□□□ 0.54
SHANK3Q9BYB0 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC18.46■□□□□ 0.54
SHANK3Q9BYB0 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.54
SHANK3Q9BYB0 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 DUT-208ENST00000559540 1441 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 HLA-DPA2-205ENST00000433582 733 ntBASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 AL451000.1-201ENST00000451300 1186 ntBASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ESR1-214ENST00000638569 132 ntTSL 5 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
SHANK3Q9BYB0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC092896.1-201ENST00000465850 380 ntBASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC008026.2-201ENST00000495438 348 ntBASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AL359091.4-201ENST00000610052 409 ntBASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SHANK3Q9BYB0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms