Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC02228-204ENST00000642115 2962 ntBASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AC016700.1-201ENST00000429424 312 ntBASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 TPT1P11-201ENST00000458482 498 ntBASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AC022494.1-201ENST00000466044 728 ntBASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AL451050.2-201ENST00000606967 682 ntBASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 FAM90A7P-201ENST00000382628 1395 ntBASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 FAM90A23P-201ENST00000400136 1395 ntBASIC18.8■□□□□ 0.6
CHMP4AQ9BY43 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 TUBBP5-203ENST00000508529 1334 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AC078875.1-201ENST00000431907 724 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 KLF2P1-201ENST00000447438 1042 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AC125604.1-201ENST00000496255 707 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AC022217.1-201ENST00000521069 738 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AC009779.1-201ENST00000551138 283 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 AC005962.1-201ENST00000584100 773 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms