Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 KRT17P8-201ENST00000540749 863 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RAB43P1-201ENST00000561790 589 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC134312.5-201ENST00000568031 1313 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 AC093525.8-201ENST00000624099 1342 ntBASIC14.29□□□□□ -0.12
VMP1Q96GC9 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VMP1Q96GC9 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
VMP1Q96GC9 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 AC234783.1-201ENST00000441761 496 ntBASIC14.28□□□□□ -0.12
VMP1Q96GC9 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 AC018665.1-201ENST00000622927 1362 ntBASIC14.28□□□□□ -0.12
VMP1Q96GC9 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.12
VMP1Q96GC9 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VMP1Q96GC9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
VMP1Q96GC9 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
VMP1Q96GC9 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
VMP1Q96GC9 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.27□□□□□ -0.12
VMP1Q96GC9 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 AC007787.1-201ENST00000588095 1583 ntBASIC14.27□□□□□ -0.12
VMP1Q96GC9 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 CICP8-201ENST00000455800 2813 ntBASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms