Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RN7SKP230-201ENST00000365642 335 ntBASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 AC004945.1-201ENST00000416738 983 ntBASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 C2orf69P2-201ENST00000562032 1123 ntBASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 ZACNP1-201ENST00000612259 710 ntBASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 RN7SKP175-201ENST00000408472 289 ntBASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 CNN2P10-201ENST00000443067 918 ntBASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 MIR6752-201ENST00000618442 71 ntBASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 AC092053.3-201ENST00000641308 4975 ntBASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 PEG13-201ENST00000631594 5667 ntBASIC13.73□□□□□ -0.21
NUP54Q7Z3B4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AL136309.1-201ENST00000403917 691 ntBASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AL355994.2-201ENST00000447882 704 ntBASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AC010328.2-201ENST00000597698 1111 ntBASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AC011840.2-201ENST00000563063 1520 ntBASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms