Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 IGHV1-12-201ENST00000518307 205 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 TCAF2P1-201ENST00000291129 2421 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 MIR1301-201ENST00000408518 82 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 RN7SL582P-201ENST00000491078 279 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 IGHEP2-201ENST00000519308 1256 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AC233280.19-201ENST00000633223 136 ntBASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88AQ3V6T2 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AC139712.1-201ENST00000378256 1875 ntBASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AC092384.3-202ENST00000564646 2873 ntBASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88AQ3V6T2 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms