Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 AC000095.1-201ENST00000603208 874 ntBASIC11.45□□□□□ -0.58
HIST1H1AQ02539 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 AL158212.4-201ENST00000624062 1286 ntBASIC11.45□□□□□ -0.58
HIST1H1AQ02539 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC11.45□□□□□ -0.58
HIST1H1AQ02539 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 BTBD7P1-201ENST00000447253 1453 ntBASIC11.44□□□□□ -0.58
HIST1H1AQ02539 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 RPL28-205ENST00000558131 444 ntTSL 5 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC092337.1-201ENST00000568699 1129 ntBASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC036164.1-201ENST00000570544 333 ntBASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 AC018442.1-201ENST00000421439 2061 ntBASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
HIST1H1AQ02539 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HIST1H1AQ02539 MTHFR-210ENST00000641407 2387 ntBASIC11.43□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms