Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RHBDL3P58872 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RHBDL3P58872 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.26■□□□□ 0.35
RHBDL3P58872 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC17.26■□□□□ 0.35
RHBDL3P58872 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.26■□□□□ 0.35
RHBDL3P58872 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.26■□□□□ 0.35
RHBDL3P58872 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.26■□□□□ 0.35
RHBDL3P58872 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.26■□□□□ 0.35
RHBDL3P58872 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC17.26■□□□□ 0.35
RHBDL3P58872 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 AC005632.3-201ENST00000605544 308 ntBASIC17.26■□□□□ 0.35
RHBDL3P58872 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 AC090386.2-201ENST00000623010 1039 ntBASIC17.26■□□□□ 0.35
RHBDL3P58872 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.26■□□□□ 0.35
RHBDL3P58872 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.26■□□□□ 0.35
RHBDL3P58872 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 FGD5P1-202ENST00000614866 2498 ntBASIC17.26■□□□□ 0.35
RHBDL3P58872 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RHBDL3P58872 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.25■□□□□ 0.35
RHBDL3P58872 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 AC074138.1-201ENST00000611182 1303 ntBASIC17.25■□□□□ 0.35
RHBDL3P58872 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RHBDL3P58872 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RHBDL3P58872 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RHBDL3P58872 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 AL807761.2-201ENST00000422849 729 ntBASIC17.25■□□□□ 0.35
RHBDL3P58872 FTH1P22-201ENST00000456305 520 ntBASIC17.25■□□□□ 0.35
RHBDL3P58872 AC130709.1-201ENST00000484779 1212 ntBASIC17.25■□□□□ 0.35
RHBDL3P58872 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 AC144831.1-201ENST00000573312 2656 ntBASIC17.25■□□□□ 0.35
RHBDL3P58872 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 AGGF1P1-201ENST00000509500 2073 ntBASIC17.25■□□□□ 0.35
RHBDL3P58872 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.25■□□□□ 0.35
RHBDL3P58872 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
RHBDL3P58872 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RHBDL3P58872 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RHBDL3P58872 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 KRT17P5-201ENST00000332088 839 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC17.24■□□□□ 0.35
RHBDL3P58872 SOD2-202ENST00000367054 815 ntTSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 AL512430.1-201ENST00000392575 860 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.24■□□□□ 0.35
RHBDL3P58872 RPSAP31-201ENST00000416648 895 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 RPL17P11-201ENST00000417593 544 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 AL161932.2-201ENST00000435436 679 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC17.24■□□□□ 0.35
RHBDL3P58872 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 AC104784.1-201ENST00000473096 294 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
RHBDL3P58872 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC17.24■□□□□ 0.35
RHBDL3P58872 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RHBDL3P58872 AL591471.1-201ENST00000621855 229 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 AC011491.1-203ENST00000637688 543 ntBASIC17.24■□□□□ 0.35
RHBDL3P58872 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RHBDL3P58872 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms