Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
COL18A1P39060 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
COL18A1P39060 OR51A9P-201ENST00000422578 911 ntBASIC18.83■□□□□ 0.6
COL18A1P39060 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC18.83■□□□□ 0.6
COL18A1P39060 RN7SL375P-201ENST00000492442 298 ntBASIC18.83■□□□□ 0.6
COL18A1P39060 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC18.83■□□□□ 0.6
COL18A1P39060 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 CES1P2-201ENST00000566467 1242 ntBASIC18.83■□□□□ 0.6
COL18A1P39060 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 AC005274.1-201ENST00000623460 802 ntBASIC18.83■□□□□ 0.6
COL18A1P39060 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC18.83■□□□□ 0.6
COL18A1P39060 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 AC022532.1-201ENST00000624563 1728 ntBASIC18.83■□□□□ 0.6
COL18A1P39060 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.83■□□□□ 0.6
COL18A1P39060 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.83■□□□□ 0.6
COL18A1P39060 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 DUT-208ENST00000559540 1441 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 FKBP4P8-201ENST00000610931 1369 ntBASIC18.82■□□□□ 0.6
COL18A1P39060 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 ENPP7P8-202ENST00000527856 1345 ntBASIC18.82■□□□□ 0.6
COL18A1P39060 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 AC103592.1-201ENST00000394513 664 ntBASIC18.82■□□□□ 0.6
COL18A1P39060 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL18A1P39060 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC18.82■□□□□ 0.6
COL18A1P39060 RPS18P9-201ENST00000482817 460 ntBASIC18.82■□□□□ 0.6
COL18A1P39060 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC18.82■□□□□ 0.6
COL18A1P39060 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
COL18A1P39060 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
COL18A1P39060 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL18A1P39060 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL18A1P39060 AC015909.5-201ENST00000624336 2266 ntBASIC18.82■□□□□ 0.6
COL18A1P39060 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL18A1P39060 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC18.82■□□□□ 0.6
COL18A1P39060 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
COL18A1P39060 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 AL357373.1-201ENST00000394974 322 ntBASIC18.81■□□□□ 0.6
COL18A1P39060 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC18.81■□□□□ 0.6
COL18A1P39060 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 KRT18P62-201ENST00000446618 1287 ntBASIC18.81■□□□□ 0.6
COL18A1P39060 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC18.81■□□□□ 0.6
COL18A1P39060 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC18.81■□□□□ 0.6
COL18A1P39060 AC126755.5-201ENST00000622756 267 ntBASIC18.81■□□□□ 0.6
COL18A1P39060 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC18.81■□□□□ 0.6
COL18A1P39060 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC18.81■□□□□ 0.6
COL18A1P39060 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL18A1P39060 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL18A1P39060 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL18A1P39060 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC18.81■□□□□ 0.6
COL18A1P39060 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL18A1P39060 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC18.81■□□□□ 0.6
COL18A1P39060 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC18.81■□□□□ 0.6
COL18A1P39060 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL18A1P39060 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC18.81■□□□□ 0.6
COL18A1P39060 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC18.81■□□□□ 0.6
COL18A1P39060 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC18.8■□□□□ 0.6
COL18A1P39060 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL18A1P39060 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms