Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC9P31274 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 GUSBP10-201ENST00000417412 665 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC9P31274 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HOXC9P31274 RPL18AP8-201ENST00000486071 528 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 ALG1L13P-202ENST00000519320 584 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 NUDT4P2-201ENST00000578341 546 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC9P31274 AC021016.3-201ENST00000608367 477 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC9P31274 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 API5-208ENST00000531273 1868 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 AC090502.4-201ENST00000551714 1386 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 AL354702.1-201ENST00000442006 1960 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 LAP3P2-201ENST00000454686 1454 ntBASIC19.28■□□□□ 0.68
HOXC9P31274 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC9P31274 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC9P31274 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
HOXC9P31274 TCAF2P1-201ENST00000291129 2421 ntBASIC19.27■□□□□ 0.68
HOXC9P31274 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HOXC9P31274 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HOXC9P31274 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HOXC9P31274 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HOXC9P31274 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.27■□□□□ 0.68
HOXC9P31274 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HOXC9P31274 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 AL354861.1-201ENST00000445213 355 ntBASIC19.27■□□□□ 0.68
HOXC9P31274 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC19.27■□□□□ 0.68
HOXC9P31274 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.27■□□□□ 0.68
HOXC9P31274 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HOXC9P31274 SORD2P-201ENST00000558556 1069 ntBASIC19.27■□□□□ 0.68
HOXC9P31274 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC19.27■□□□□ 0.68
HOXC9P31274 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
HOXC9P31274 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC9P31274 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HOXC9P31274 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC19.27■□□□□ 0.67
HOXC9P31274 ING5-213ENST00000636051 4199 ntTSL 5 BASIC19.27■□□□□ 0.67
HOXC9P31274 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
HOXC9P31274 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC9P31274 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.26■□□□□ 0.67
HOXC9P31274 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HOXC9P31274 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
HOXC9P31274 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HOXC9P31274 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC19.26■□□□□ 0.67
HOXC9P31274 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC19.26■□□□□ 0.67
HOXC9P31274 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 CR383656.3-201ENST00000551315 183 ntBASIC19.26■□□□□ 0.67
HOXC9P31274 AC005586.2-201ENST00000563946 837 ntBASIC19.26■□□□□ 0.67
HOXC9P31274 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC19.26■□□□□ 0.67
HOXC9P31274 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC19.26■□□□□ 0.67
HOXC9P31274 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 AL132780.4-201ENST00000624870 1135 ntBASIC19.26■□□□□ 0.67
HOXC9P31274 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC9P31274 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC9P31274 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms