Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
COL8A1P27658 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC12.92□□□□□ -0.34
COL8A1P27658 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 MBP-201ENST00000354542 575 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 BCAS2P2-201ENST00000425064 674 ntBASIC12.92□□□□□ -0.34
COL8A1P27658 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL8A1P27658 AC092638.2-201ENST00000441105 947 ntBASIC12.92□□□□□ -0.34
COL8A1P27658 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC12.92□□□□□ -0.34
COL8A1P27658 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.92□□□□□ -0.34
COL8A1P27658 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 THY1-209ENST00000580275 578 ntTSL 3 BASIC12.92□□□□□ -0.34
COL8A1P27658 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC12.92□□□□□ -0.34
COL8A1P27658 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC12.92□□□□□ -0.34
COL8A1P27658 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC12.92□□□□□ -0.34
COL8A1P27658 AC138466.5-201ENST00000624002 808 ntBASIC12.92□□□□□ -0.34
COL8A1P27658 AC103798.2-201ENST00000624292 632 ntBASIC12.92□□□□□ -0.34
COL8A1P27658 AL451007.2-201ENST00000632004 563 ntBASIC12.92□□□□□ -0.34
COL8A1P27658 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL8A1P27658 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.92□□□□□ -0.34
COL8A1P27658 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL8A1P27658 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
COL8A1P27658 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
COL8A1P27658 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC12.91□□□□□ -0.34
COL8A1P27658 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
COL8A1P27658 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
COL8A1P27658 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL8A1P27658 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
COL8A1P27658 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.91□□□□□ -0.34
COL8A1P27658 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.91□□□□□ -0.34
COL8A1P27658 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC12.91□□□□□ -0.34
COL8A1P27658 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL8A1P27658 AQP7P5-201ENST00000428759 1049 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
COL8A1P27658 HLA-K-203ENST00000430151 1046 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 SERBP1P2-201ENST00000436888 1164 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 BRI3P1-201ENST00000440440 378 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 AQP7P4-201ENST00000447083 1042 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 AQP7P2-201ENST00000453967 1041 ntBASIC12.91□□□□□ -0.34
COL8A1P27658 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms