Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 AC112693.3-201ENST00000624819 1983 ntBASIC21.54■■□□□ 1.04
RAPGEF3O95398 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 AC092573.1-201ENST00000433054 884 ntBASIC21.54■■□□□ 1.04
RAPGEF3O95398 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 HPX-213ENST00000615166 826 ntTSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 AC073869.4-201ENST00000620841 800 ntBASIC21.54■■□□□ 1.04
RAPGEF3O95398 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.54■■□□□ 1.04
RAPGEF3O95398 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAPGEF3O95398 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 LAP3P2-201ENST00000454686 1454 ntBASIC21.53■■□□□ 1.04
RAPGEF3O95398 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 AL121949.3-201ENST00000406684 385 ntBASIC21.53■■□□□ 1.04
RAPGEF3O95398 AC098657.1-201ENST00000416270 1135 ntBASIC21.53■■□□□ 1.04
RAPGEF3O95398 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 TYMSP2-201ENST00000589501 424 ntBASIC21.53■■□□□ 1.04
RAPGEF3O95398 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAPGEF3O95398 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC21.53■■□□□ 1.04
RAPGEF3O95398 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 C18orf15-201ENST00000623680 2534 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 FAU-201ENST00000279259 461 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 AC022080.1-201ENST00000366255 781 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 BX679664.3-201ENST00000414070 555 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 AC113935.1-201ENST00000471722 555 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 AC100858.1-201ENST00000514059 1228 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 AC078814.4-201ENST00000546650 327 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 URAHP-205ENST00000610227 398 ntBASIC21.52■■□□□ 1.04
RAPGEF3O95398 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAPGEF3O95398 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC21.52■■□□□ 1.04
RAPGEF3O95398 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms