Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.96□□□□□ -0.18
LDB3O75112 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LDB3O75112 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.95□□□□□ -0.18
LDB3O75112 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.95□□□□□ -0.18
LDB3O75112 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 AL136309.1-201ENST00000403917 691 ntBASIC13.95□□□□□ -0.18
LDB3O75112 FAM21FP-201ENST00000426241 1131 ntBASIC13.95□□□□□ -0.18
LDB3O75112 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.95□□□□□ -0.18
LDB3O75112 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.95□□□□□ -0.18
LDB3O75112 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.95□□□□□ -0.18
LDB3O75112 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.95□□□□□ -0.18
LDB3O75112 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.95□□□□□ -0.18
LDB3O75112 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.95□□□□□ -0.18
LDB3O75112 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
LDB3O75112 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LDB3O75112 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.95□□□□□ -0.18
LDB3O75112 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.94□□□□□ -0.18
LDB3O75112 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.94□□□□□ -0.18
LDB3O75112 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.94□□□□□ -0.18
LDB3O75112 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
LDB3O75112 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.94□□□□□ -0.18
LDB3O75112 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.94□□□□□ -0.18
LDB3O75112 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.94□□□□□ -0.18
LDB3O75112 AC010328.2-201ENST00000597698 1111 ntBASIC13.94□□□□□ -0.18
LDB3O75112 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 AL358472.3-201ENST00000608147 415 ntBASIC13.94□□□□□ -0.18
LDB3O75112 AC009542.2-202ENST00000619004 1067 ntBASIC13.94□□□□□ -0.18
LDB3O75112 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 AC005912.2-201ENST00000619492 2400 ntBASIC13.94□□□□□ -0.18
LDB3O75112 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
LDB3O75112 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
LDB3O75112 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LDB3O75112 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms