Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.52■□□□□ 0.24
MSH4O15457 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
MSH4O15457 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 AC016700.1-201ENST00000429424 312 ntBASIC16.52■□□□□ 0.24
MSH4O15457 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
MSH4O15457 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.52■□□□□ 0.24
MSH4O15457 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.52■□□□□ 0.24
MSH4O15457 RBM8B-201ENST00000555532 525 ntBASIC16.52■□□□□ 0.24
MSH4O15457 AC013355.1-201ENST00000562625 723 ntBASIC16.52■□□□□ 0.24
MSH4O15457 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.52■□□□□ 0.23
MSH4O15457 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.52■□□□□ 0.23
MSH4O15457 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSH4O15457 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSH4O15457 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSH4O15457 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
MSH4O15457 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.52■□□□□ 0.23
MSH4O15457 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
MSH4O15457 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
MSH4O15457 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
MSH4O15457 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MSH4O15457 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MSH4O15457 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.51■□□□□ 0.23
MSH4O15457 BX284668.4-201ENST00000453917 508 ntBASIC16.51■□□□□ 0.23
MSH4O15457 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.51■□□□□ 0.23
MSH4O15457 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.51■□□□□ 0.23
MSH4O15457 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.51■□□□□ 0.23
MSH4O15457 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
MSH4O15457 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MSH4O15457 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
MSH4O15457 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH4O15457 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH4O15457 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
MSH4O15457 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH4O15457 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 AKR7A2P1-201ENST00000460134 915 ntBASIC16.5■□□□□ 0.23
MSH4O15457 AC106794.1-201ENST00000506935 792 ntBASIC16.5■□□□□ 0.23
MSH4O15457 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 AC027237.1-201ENST00000560942 655 ntBASIC16.5■□□□□ 0.23
MSH4O15457 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.5■□□□□ 0.23
MSH4O15457 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms