Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 HNRNPA1P2-207ENST00000432375 960 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.59□□□□□ -0.39
COL12A1Q99715 AL035414.1-201ENST00000451327 857 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 MBP-230ENST00000528160 584 ntTSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 AP001462.1-201ENST00000594089 452 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 AD000864.1-201ENST00000624076 2295 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
COL12A1Q99715 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 LINC01101-201ENST00000622953 1884 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 AL157823.1-201ENST00000403727 628 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 DUX4L50-201ENST00000455245 715 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC12.59□□□□□ -0.39
COL12A1Q99715 RN7SL523P-201ENST00000484401 298 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 RN7SL564P-201ENST00000496309 250 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC12.59□□□□□ -0.39
COL12A1Q99715 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC12.59□□□□□ -0.39
COL12A1Q99715 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC12.59□□□□□ -0.39
COL12A1Q99715 KRT8P1-201ENST00000557533 1207 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 GGNBP1-204ENST00000613113 887 ntBASIC12.59□□□□□ -0.39
COL12A1Q99715 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.59□□□□□ -0.39
COL12A1Q99715 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
COL12A1Q99715 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL12A1Q99715 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
COL12A1Q99715 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
COL12A1Q99715 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
COL12A1Q99715 MED15P3-201ENST00000413613 326 ntBASIC12.58□□□□□ -0.39
COL12A1Q99715 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.58□□□□□ -0.39
COL12A1Q99715 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC12.58□□□□□ -0.39
COL12A1Q99715 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC12.58□□□□□ -0.39
COL12A1Q99715 RN7SL672P-201ENST00000474091 317 ntBASIC12.58□□□□□ -0.39
COL12A1Q99715 AC008494.1-201ENST00000497612 796 ntBASIC12.58□□□□□ -0.39
COL12A1Q99715 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.58□□□□□ -0.39
COL12A1Q99715 IFNL3P1-201ENST00000595082 501 ntBASIC12.58□□□□□ -0.39
COL12A1Q99715 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC12.58□□□□□ -0.39
COL12A1Q99715 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC12.58□□□□□ -0.39
COL12A1Q99715 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
COL12A1Q99715 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
COL12A1Q99715 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC12.58□□□□□ -0.4
COL12A1Q99715 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC12.58□□□□□ -0.4
COL12A1Q99715 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC12.58□□□□□ -0.4
COL12A1Q99715 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 SSR4P1-203ENST00000599569 2260 ntBASIC12.58□□□□□ -0.4
COL12A1Q99715 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms