Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
USP28Q96RU2 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
USP28Q96RU2 ACTG1P3-201ENST00000431775 1114 ntBASIC16.93■□□□□ 0.3
USP28Q96RU2 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.93■□□□□ 0.3
USP28Q96RU2 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.93■□□□□ 0.3
USP28Q96RU2 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.93■□□□□ 0.3
USP28Q96RU2 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.93■□□□□ 0.3
USP28Q96RU2 MIR5189-201ENST00000577370 114 ntBASIC16.93■□□□□ 0.3
USP28Q96RU2 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.93■□□□□ 0.3
USP28Q96RU2 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.93■□□□□ 0.3
USP28Q96RU2 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.93■□□□□ 0.3
USP28Q96RU2 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 KRT8P24-201ENST00000560290 1559 ntBASIC16.93■□□□□ 0.3
USP28Q96RU2 AL590440.2-201ENST00000641973 1595 ntBASIC16.93■□□□□ 0.3
USP28Q96RU2 FKBP4P6-201ENST00000457486 1332 ntBASIC16.93■□□□□ 0.3
USP28Q96RU2 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.93■□□□□ 0.3
USP28Q96RU2 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP28Q96RU2 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USP28Q96RU2 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
USP28Q96RU2 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.92■□□□□ 0.3
USP28Q96RU2 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.92■□□□□ 0.3
USP28Q96RU2 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.92■□□□□ 0.3
USP28Q96RU2 AC106760.1-201ENST00000508690 800 ntBASIC16.92■□□□□ 0.3
USP28Q96RU2 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.92■□□□□ 0.3
USP28Q96RU2 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.92■□□□□ 0.3
USP28Q96RU2 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 MIR4745-201ENST00000577608 62 ntBASIC16.92■□□□□ 0.3
USP28Q96RU2 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.92■□□□□ 0.3
USP28Q96RU2 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.92■□□□□ 0.3
USP28Q96RU2 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms