Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.13■□□□□ 0.17
VPS52Q8N1B4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 MESTP3-201ENST00000503460 968 ntBASIC16.13■□□□□ 0.17
VPS52Q8N1B4 AC005740.2-201ENST00000511085 419 ntBASIC16.13■□□□□ 0.17
VPS52Q8N1B4 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 DUX4L47-201ENST00000566374 394 ntBASIC16.13■□□□□ 0.17
VPS52Q8N1B4 CU633904.3-201ENST00000624042 1029 ntBASIC16.13■□□□□ 0.17
VPS52Q8N1B4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS52Q8N1B4 KRT8P29-201ENST00000420409 1371 ntBASIC16.13■□□□□ 0.17
VPS52Q8N1B4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AC245884.6-201ENST00000515672 1067 ntBASIC16.12■□□□□ 0.17
VPS52Q8N1B4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AC097724.1-201ENST00000609581 426 ntBASIC16.12■□□□□ 0.17
VPS52Q8N1B4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AP001505.2-201ENST00000616815 443 ntBASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AL023803.2-201ENST00000620080 638 ntBASIC16.12■□□□□ 0.17
VPS52Q8N1B4 AC091812.3-201ENST00000621362 345 ntBASIC16.12■□□□□ 0.17
VPS52Q8N1B4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 FKBP4P6-201ENST00000457486 1332 ntBASIC16.12■□□□□ 0.17
VPS52Q8N1B4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS52Q8N1B4 ST20-AS1-201ENST00000560255 4223 ntBASIC16.11■□□□□ 0.17
VPS52Q8N1B4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 AC126365.1-201ENST00000578585 1514 ntBASIC16.11■□□□□ 0.17
VPS52Q8N1B4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms