Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 RN7SKP214-201ENST00000364208 315 ntBASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC009093.10-201ENST00000641956 1442 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AL354702.1-201ENST00000442006 1960 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 TNRC18P2-201ENST00000417666 2714 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AL662890.1-201ENST00000396818 632 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC024681.1-201ENST00000521917 487 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC097724.1-201ENST00000609581 426 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC133540.1-201ENST00000620845 1019 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 AL157791.1-201ENST00000553667 1699 ntBASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC60Q8IWA6 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AC068587.6-202ENST00000641839 5619 ntBASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 KRT18P36-201ENST00000411618 1276 ntBASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AL596276.2-201ENST00000447525 331 ntBASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 RN7SL574P-201ENST00000581512 297 ntBASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.36■□□□□ 0.21
CCDC60Q8IWA6 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms