Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 YBX1P6-201ENST00000442962 1002 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AL391280.1-201ENST00000506969 1062 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 RN7SL713P-201ENST00000582127 302 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 MIR4259-201ENST00000584466 101 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AC138696.2-201ENST00000607376 223 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AL008721.1-201ENST00000609964 604 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 FAM21FP-201ENST00000426241 1131 ntBASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 HOMER2P2-201ENST00000451621 847 ntBASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 RNA5SP412-201ENST00000516234 123 ntBASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 DUX4L45-201ENST00000566406 1057 ntBASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 AL122018.1-201ENST00000446607 2310 ntBASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NUP54Q7Z3B4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NUP54Q7Z3B4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms