Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 PDIA3P1-201ENST00000471856 1510 ntBASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 ARSEP1-201ENST00000420443 635 ntBASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 AC112492.5-201ENST00000421897 457 ntBASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 RHOXF1P1-202ENST00000635473 501 ntBASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SYNE3Q6ZMZ3 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 AC011840.2-201ENST00000563063 1520 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 AC006001.1-201ENST00000325130 474 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 RPL7P3-201ENST00000441388 714 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 GPR53P-205ENST00000457298 1084 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 OR10B1P-201ENST00000601666 907 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 AL512343.1-201ENST00000605837 169 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 AL136172.1-201ENST00000598590 1394 ntBASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SYNE3Q6ZMZ3 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SYNE3Q6ZMZ3 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms