Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 AC004801.1-201ENST00000549557 360 ntBASIC8.8□□□□□ -1
HSPG2P98160 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC8.8□□□□□ -1
HSPG2P98160 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 AP005264.5-201ENST00000590066 467 ntBASIC8.8□□□□□ -1
HSPG2P98160 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC8.8□□□□□ -1
HSPG2P98160 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 U3.41-201ENST00000408711 219 ntBASIC8.79□□□□□ -1
HSPG2P98160 AC000078.1-201ENST00000420617 682 ntBASIC8.79□□□□□ -1
HSPG2P98160 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 OR4C14P-201ENST00000440929 923 ntBASIC8.79□□□□□ -1
HSPG2P98160 AP000533.1-201ENST00000456143 1177 ntBASIC8.79□□□□□ -1
HSPG2P98160 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 AL021707.6-201ENST00000609212 491 ntBASIC8.79□□□□□ -1
HSPG2P98160 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 MX1-218ENST00000619682 1980 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 RBM14-205ENST00000443702 732 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 MVK-217ENST00000639206 367 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 STRN-202ENST00000379213 2254 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 AC097474.1-201ENST00000506481 1371 ntBASIC8.79□□□□□ -1
HSPG2P98160 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC8.79□□□□□ -1
HSPG2P98160 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 NALT1-202ENST00000450304 437 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 RN7SL363P-201ENST00000482412 273 ntBASIC8.79□□□□□ -1
HSPG2P98160 RN7SL76P-201ENST00000482435 289 ntBASIC8.79□□□□□ -1
HSPG2P98160 CCNL2P1-201ENST00000512846 969 ntBASIC8.79□□□□□ -1
HSPG2P98160 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC8.79□□□□□ -1
HSPG2P98160 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC8.79□□□□□ -1
HSPG2P98160 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
HSPG2P98160 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
HSPG2P98160 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC8.79□□□□□ -1
HSPG2P98160 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
HSPG2P98160 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC8.78□□□□□ -1
HSPG2P98160 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC8.78□□□□□ -1
HSPG2P98160 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC8.78□□□□□ -1
HSPG2P98160 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
HSPG2P98160 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC8.78□□□□□ -1
HSPG2P98160 PPP1R2P10-201ENST00000393023 595 ntBASIC8.78□□□□□ -1
HSPG2P98160 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC8.78□□□□□ -1
HSPG2P98160 ALDOAP1-201ENST00000491506 1078 ntBASIC8.78□□□□□ -1
HSPG2P98160 AC015818.3-201ENST00000583797 589 ntBASIC8.78□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms