Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.04□□□□□ -0.16
SOX3P41225 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 MTHFR-210ENST00000641407 2387 ntBASIC14.04□□□□□ -0.16
SOX3P41225 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 REXO1L4P-201ENST00000605109 1937 ntBASIC14.03□□□□□ -0.16
SOX3P41225 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX3P41225 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.03□□□□□ -0.16
SOX3P41225 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX3P41225 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX3P41225 FAM197Y7-201ENST00000432892 766 ntBASIC14.03□□□□□ -0.16
SOX3P41225 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.03□□□□□ -0.16
SOX3P41225 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX3P41225 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.03□□□□□ -0.16
SOX3P41225 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
SOX3P41225 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SOX3P41225 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SOX3P41225 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 AL157414.3-201ENST00000624276 1954 ntBASIC14.03□□□□□ -0.16
SOX3P41225 AC136759.1-202ENST00000530858 2194 ntBASIC14.03□□□□□ -0.16
SOX3P41225 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX3P41225 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX3P41225 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SOX3P41225 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
SOX3P41225 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.02□□□□□ -0.16
SOX3P41225 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.02□□□□□ -0.16
SOX3P41225 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
SOX3P41225 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX3P41225 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SOX3P41225 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX3P41225 AC099336.1-201ENST00000417053 1171 ntBASIC14.02□□□□□ -0.17
SOX3P41225 HLA-K-203ENST00000430151 1046 ntBASIC14.02□□□□□ -0.17
SOX3P41225 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 RPS2P32-201ENST00000439199 892 ntBASIC14.02□□□□□ -0.17
SOX3P41225 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX3P41225 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX3P41225 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX3P41225 BNIP3P42-201ENST00000454982 569 ntBASIC14.02□□□□□ -0.17
SOX3P41225 AL590640.2-201ENST00000457038 527 ntBASIC14.02□□□□□ -0.17
SOX3P41225 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX3P41225 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms