Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 EIF3FP3-201ENST00000434851 1086 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 RNMTL1P1-201ENST00000454103 560 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.5□□□□□ -0.41
ABCA1O95477 IGLV3-15-201ENST00000518356 244 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 AC132192.2-201ENST00000596206 1147 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.5□□□□□ -0.41
ABCA1O95477 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
ABCA1O95477 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 AC026316.1-201ENST00000398900 414 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 HLA-J-204ENST00000495278 958 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 PTK2-225ENST00000520892 571 ntTSL 4 BASIC12.5□□□□□ -0.41
ABCA1O95477 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 AP001002.3-201ENST00000623482 206 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
ABCA1O95477 AC112693.3-201ENST00000624819 1983 ntBASIC12.5□□□□□ -0.41
ABCA1O95477 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
ABCA1O95477 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA1O95477 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA1O95477 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ABCA1O95477 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
ABCA1O95477 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
ABCA1O95477 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.49□□□□□ -0.41
ABCA1O95477 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.49□□□□□ -0.41
ABCA1O95477 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA1O95477 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
ABCA1O95477 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA1O95477 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
ABCA1O95477 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.49□□□□□ -0.41
ABCA1O95477 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.49□□□□□ -0.41
ABCA1O95477 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA1O95477 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA1O95477 AC104640.1-201ENST00000562617 2109 ntBASIC12.49□□□□□ -0.41
ABCA1O95477 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC12.49□□□□□ -0.41
ABCA1O95477 SAMD11P1-201ENST00000571429 661 ntBASIC12.49□□□□□ -0.41
ABCA1O95477 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
ABCA1O95477 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms