Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC067750.1-201ENST00000608826 6545 ntBASIC16.15■□□□□ 0.18
RNF40O75150 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RNF40O75150 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RNF40O75150 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF40O75150 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.14■□□□□ 0.18
RNF40O75150 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
RNF40O75150 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.18
RNF40O75150 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 SSR1P1-201ENST00000407630 814 ntBASIC16.14■□□□□ 0.17
RNF40O75150 TARDBPP1-201ENST00000442013 1203 ntBASIC16.14■□□□□ 0.17
RNF40O75150 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.14■□□□□ 0.17
RNF40O75150 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 FAM8A2P-201ENST00000528813 1142 ntBASIC16.14■□□□□ 0.17
RNF40O75150 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.14■□□□□ 0.17
RNF40O75150 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.14■□□□□ 0.17
RNF40O75150 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.14■□□□□ 0.17
RNF40O75150 BRI3BPP1-201ENST00000594224 787 ntBASIC16.14■□□□□ 0.17
RNF40O75150 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
RNF40O75150 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 AC093525.8-201ENST00000624099 1342 ntBASIC16.14■□□□□ 0.17
RNF40O75150 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC16.14■□□□□ 0.17
RNF40O75150 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC16.14■□□□□ 0.17
RNF40O75150 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNF40O75150 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 WASH3P-207ENST00000560956 1394 ntBASIC16.13■□□□□ 0.17
RNF40O75150 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.13■□□□□ 0.17
RNF40O75150 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.13■□□□□ 0.17
RNF40O75150 BCRP2-202ENST00000447763 634 ntBASIC16.13■□□□□ 0.17
RNF40O75150 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 BCRP6-201ENST00000510112 632 ntBASIC16.13■□□□□ 0.17
RNF40O75150 BCRP7-201ENST00000511549 544 ntBASIC16.13■□□□□ 0.17
RNF40O75150 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.13■□□□□ 0.17
RNF40O75150 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.13■□□□□ 0.17
RNF40O75150 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 RN7SL219P-201ENST00000582872 296 ntBASIC16.13■□□□□ 0.17
RNF40O75150 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RNF40O75150 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.13■□□□□ 0.17
RNF40O75150 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RNF40O75150 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms