Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 AC232323.1-201ENST00000540724 2099 ntBASIC16.55■□□□□ 0.24
MSH4O15457 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
MSH4O15457 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH4O15457 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 AC215219.1-201ENST00000400706 1817 ntBASIC16.54■□□□□ 0.24
MSH4O15457 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MSH4O15457 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 AC144522.1-201ENST00000625111 1658 ntBASIC16.54■□□□□ 0.24
MSH4O15457 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.54■□□□□ 0.24
MSH4O15457 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
MSH4O15457 RN7SL163P-201ENST00000583100 276 ntBASIC16.54■□□□□ 0.24
MSH4O15457 AC008805.1-201ENST00000590892 364 ntBASIC16.54■□□□□ 0.24
MSH4O15457 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
MSH4O15457 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.54■□□□□ 0.24
MSH4O15457 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH4O15457 CYP4F23P-201ENST00000593402 1579 ntBASIC16.54■□□□□ 0.24
MSH4O15457 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH4O15457 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH4O15457 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH4O15457 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MSH4O15457 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.54■□□□□ 0.24
MSH4O15457 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
MSH4O15457 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
MSH4O15457 FAM90A7P-201ENST00000382628 1395 ntBASIC16.53■□□□□ 0.24
MSH4O15457 FAM90A23P-201ENST00000400136 1395 ntBASIC16.53■□□□□ 0.24
MSH4O15457 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.53■□□□□ 0.24
MSH4O15457 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.53■□□□□ 0.24
MSH4O15457 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 AC006122.1-201ENST00000493323 440 ntBASIC16.53■□□□□ 0.24
MSH4O15457 AC005740.2-201ENST00000511085 419 ntBASIC16.53■□□□□ 0.24
MSH4O15457 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.53■□□□□ 0.24
MSH4O15457 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.53■□□□□ 0.24
MSH4O15457 SNORD3B-2-202ENST00000571722 791 ntBASIC16.53■□□□□ 0.24
MSH4O15457 AC090164.2-201ENST00000611487 516 ntBASIC16.53■□□□□ 0.24
MSH4O15457 AP000346.4-201ENST00000614827 381 ntBASIC16.53■□□□□ 0.24
MSH4O15457 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.53■□□□□ 0.24
MSH4O15457 AC067930.6-201ENST00000623257 4947 ntBASIC16.53■□□□□ 0.24
MSH4O15457 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.53■□□□□ 0.24
MSH4O15457 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSH4O15457 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.53■□□□□ 0.24
MSH4O15457 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
MSH4O15457 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSH4O15457 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.52■□□□□ 0.24
MSH4O15457 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms