Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AC006001.1-201ENST00000325130 474 ntBASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AC004945.1-201ENST00000416738 983 ntBASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AL035252.4-201ENST00000624174 288 ntBASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
AP4E1Q9UPM8 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AC234783.1-201ENST00000441761 496 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AP000812.2-201ENST00000538934 718 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 KRT17P8-201ENST00000540749 863 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AC106886.1-201ENST00000568660 600 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 BX088702.1-201ENST00000610784 235 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AL162274.1-201ENST00000617191 1098 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 RHOXF1P1-202ENST00000635473 501 ntBASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.4■□□□□ 0.06
AP4E1Q9UPM8 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 AC015688.4-201ENST00000580780 1647 ntBASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
AP4E1Q9UPM8 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms