Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 AC004241.5-201ENST00000623870 2448 ntBASIC14.49□□□□□ -0.09
CCDC28BQ9BUN5 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 MIR574-201ENST00000385209 96 ntBASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 AC044860.1-202ENST00000559481 777 ntBASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 CLK3P2-201ENST00000427566 1453 ntBASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 AC073869.1-201ENST00000415574 2762 ntBASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC28BQ9BUN5 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 AC026410.3-201ENST00000514280 936 ntBASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 AL391069.4-201ENST00000609583 481 ntBASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 PRSS30P-206ENST00000641773 873 ntBASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 OS9-218ENST00000551035 2246 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 AC068760.1-201ENST00000493579 1953 ntBASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC28BQ9BUN5 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 AC087499.5-201ENST00000452760 1342 ntBASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC28BQ9BUN5 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms