Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 RPSAP52-203ENST00000622976 1023 ntBASIC14.33□□□□□ -0.12
VMP1Q96GC9 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 TCAF1P1-201ENST00000414990 2232 ntBASIC14.32□□□□□ -0.12
VMP1Q96GC9 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 NUS1P3-201ENST00000423502 862 ntBASIC14.32□□□□□ -0.12
VMP1Q96GC9 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 U91328.1-201ENST00000437528 223 ntBASIC14.32□□□□□ -0.12
VMP1Q96GC9 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 GPR53P-205ENST00000457298 1084 ntBASIC14.32□□□□□ -0.12
VMP1Q96GC9 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 AC233724.13-201ENST00000598383 410 ntBASIC14.32□□□□□ -0.12
VMP1Q96GC9 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 AL162274.1-201ENST00000617191 1098 ntBASIC14.32□□□□□ -0.12
VMP1Q96GC9 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VMP1Q96GC9 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
VMP1Q96GC9 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 LINC01230-201ENST00000625222 3017 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 BAATP1-201ENST00000412284 1225 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 KRT43P-201ENST00000434019 910 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 AL355864.2-201ENST00000447420 863 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 AC093433.1-201ENST00000458048 571 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 USP32P1-208ENST00000506594 1164 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 KRT18P25-201ENST00000508931 1278 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 SLC25A47P1-201ENST00000531577 414 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 BTNL10-201ENST00000595971 695 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 AP005019.2-201ENST00000615104 511 ntBASIC14.31□□□□□ -0.12
VMP1Q96GC9 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.31□□□□□ -0.12
VMP1Q96GC9 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VMP1Q96GC9 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms