Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 AP001267.2-201ENST00000532619 2086 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 HOMER2P2-201ENST00000451621 847 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 BNIP3P42-201ENST00000454982 569 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 BNIP3P29-201ENST00000598302 571 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 ZACNP1-201ENST00000612259 710 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 AC011447.5-201ENST00000616168 564 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 AC002472.3-201ENST00000640124 621 ntBASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SCUBE3Q8IX30 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 BCYRN1-201ENST00000418539 200 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 ACTBP11-201ENST00000436287 1126 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 YBX1P6-201ENST00000442962 1002 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 CHMP1AP1-201ENST00000445563 662 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 MIR4741-201ENST00000579822 90 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 AC137695.1-201ENST00000604126 489 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 AL358472.3-201ENST00000608147 415 ntBASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SCUBE3Q8IX30 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SCUBE3Q8IX30 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SCUBE3Q8IX30 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SCUBE3Q8IX30 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SCUBE3Q8IX30 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SCUBE3Q8IX30 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms