Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CNN2P8-201ENST00000421872 913 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 FAM8A4P-201ENST00000435433 1213 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 KRT90P-201ENST00000549264 1064 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AC007191.1-201ENST00000623179 2995 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AC138951.2-201ENST00000623455 1161 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 AC005089.1-201ENST00000619486 2241 ntBASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.52■□□□□ 0.39
SYNE3Q6ZMZ3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AL590640.2-201ENST00000457038 527 ntBASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 CROCCP4-201ENST00000457096 498 ntBASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AC078819.1-201ENST00000547454 765 ntBASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AC012085.1-201ENST00000548270 765 ntBASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AC006453.4-201ENST00000636949 1252 ntBASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 AL354989.2-201ENST00000435838 1540 ntBASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SYNE3Q6ZMZ3 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 KLF2P4-201ENST00000451959 1225 ntBASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 AC138696.2-201ENST00000607376 223 ntBASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC17.5■□□□□ 0.39
SYNE3Q6ZMZ3 AC139749.1-202ENST00000617529 3139 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms