Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 CICP16-201ENST00000502609 2813 ntBASIC16.91■□□□□ 0.3
ATL3Q6DD88 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 AC004233.3-201ENST00000607794 1269 ntBASIC16.91■□□□□ 0.3
ATL3Q6DD88 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.91■□□□□ 0.3
ATL3Q6DD88 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 FKBP4P6-201ENST00000457486 1332 ntBASIC16.91■□□□□ 0.3
ATL3Q6DD88 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATL3Q6DD88 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC16.91■□□□□ 0.3
ATL3Q6DD88 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 CTBP2P3-201ENST00000585629 1255 ntBASIC16.9■□□□□ 0.3
ATL3Q6DD88 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 WFDC1-204ENST00000613603 549 ntBASIC16.9■□□□□ 0.3
ATL3Q6DD88 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATL3Q6DD88 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
ATL3Q6DD88 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms