Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC8.81□□□□□ -1
HSPG2P98160 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 KRT8P38-201ENST00000441370 1430 ntBASIC8.81□□□□□ -1
HSPG2P98160 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC8.81□□□□□ -1
HSPG2P98160 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC8.81□□□□□ -1
HSPG2P98160 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 BX679664.3-201ENST00000414070 555 ntBASIC8.81□□□□□ -1
HSPG2P98160 VDAC1P11-201ENST00000458323 852 ntBASIC8.81□□□□□ -1
HSPG2P98160 AC113935.1-201ENST00000471722 555 ntBASIC8.81□□□□□ -1
HSPG2P98160 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC8.81□□□□□ -1
HSPG2P98160 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC8.81□□□□□ -1
HSPG2P98160 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC8.81□□□□□ -1
HSPG2P98160 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC8.81□□□□□ -1
HSPG2P98160 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 BID-213ENST00000615414 2236 ntTSL 5 BASIC8.81□□□□□ -1
HSPG2P98160 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC8.81□□□□□ -1
HSPG2P98160 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC8.81□□□□□ -1
HSPG2P98160 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
HSPG2P98160 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 AC099343.1-201ENST00000513481 609 ntBASIC8.8□□□□□ -1
HSPG2P98160 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 RN7SL480P-201ENST00000581481 294 ntBASIC8.8□□□□□ -1
HSPG2P98160 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 AL121753.2-201ENST00000624581 1461 ntBASIC8.8□□□□□ -1
HSPG2P98160 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC8.8□□□□□ -1
HSPG2P98160 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 MIR193A-201ENST00000384882 88 ntBASIC8.8□□□□□ -1
HSPG2P98160 TPT1P9-201ENST00000413759 514 ntBASIC8.8□□□□□ -1
HSPG2P98160 PHBP10-201ENST00000416467 784 ntBASIC8.8□□□□□ -1
HSPG2P98160 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 RNA5SP420-201ENST00000516997 137 ntBASIC8.8□□□□□ -1
HSPG2P98160 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 AL009176.1-201ENST00000607876 650 ntBASIC8.8□□□□□ -1
HSPG2P98160 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC8.8□□□□□ -1
HSPG2P98160 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 RPL10P8-201ENST00000522888 313 ntBASIC8.8□□□□□ -1
HSPG2P98160 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 MIR6165-201ENST00000614803 84 ntBASIC8.8□□□□□ -1
HSPG2P98160 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC8.8□□□□□ -1
HSPG2P98160 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
HSPG2P98160 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
HSPG2P98160 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC8.8□□□□□ -1
HSPG2P98160 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC8.8□□□□□ -1
HSPG2P98160 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC8.8□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms