Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PPT1-215ENST00000641471 2368 ntBASIC13.66□□□□□ -0.22
RFC3P40938 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.66□□□□□ -0.22
RFC3P40938 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.66□□□□□ -0.22
RFC3P40938 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RFC3P40938 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.66□□□□□ -0.22
RFC3P40938 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.65□□□□□ -0.22
RFC3P40938 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 AC007292.2-201ENST00000593524 1812 ntBASIC13.65□□□□□ -0.22
RFC3P40938 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.65□□□□□ -0.22
RFC3P40938 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.65□□□□□ -0.22
RFC3P40938 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
RFC3P40938 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 FNTAP2-201ENST00000430308 634 ntBASIC13.65□□□□□ -0.22
RFC3P40938 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.65□□□□□ -0.22
RFC3P40938 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.65□□□□□ -0.22
RFC3P40938 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
RFC3P40938 ACTG1P17-201ENST00000558391 1119 ntBASIC13.65□□□□□ -0.22
RFC3P40938 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.65□□□□□ -0.22
RFC3P40938 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
RFC3P40938 AL606495.2-201ENST00000605867 535 ntBASIC13.65□□□□□ -0.22
RFC3P40938 AC007663.3-201ENST00000609632 465 ntBASIC13.65□□□□□ -0.22
RFC3P40938 AL139099.5-201ENST00000635274 300 ntBASIC13.65□□□□□ -0.22
RFC3P40938 LILRP1-201ENST00000444199 1370 ntBASIC13.65□□□□□ -0.22
RFC3P40938 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.65□□□□□ -0.22
RFC3P40938 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.65□□□□□ -0.22
RFC3P40938 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.65□□□□□ -0.22
RFC3P40938 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RFC3P40938 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.23
RFC3P40938 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.64□□□□□ -0.23
RFC3P40938 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.64□□□□□ -0.23
RFC3P40938 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.64□□□□□ -0.23
RFC3P40938 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.64□□□□□ -0.23
RFC3P40938 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
RFC3P40938 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
RFC3P40938 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
RFC3P40938 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.64□□□□□ -0.23
RFC3P40938 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
RFC3P40938 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RFC3P40938 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms